Fuel cell (FC)/battery hybrid systems have attracted substantial attention for achieving zero-emissions buses, trucks, ships, and planes. An online energy management system (EMS) is essential for these hybrid systems, it controls energy flow and ensures optimal system performance. Key aspects include fuel efficiency and mitigating FC and battery degradation. This paper proposes a health-aware EMS for FC and battery hybrid systems with multiple FC stacks. The proposed EMS employs mixed integer quadratic programming (MIQP) to control each FC stack in the hybrid system independently, i.e.,...